parallelizer - a command-line utility for queuing the parallel execution of independent commands
fastahack - a command-line utility and library for indexing and sequence extraction from FASTA files
mutatrix - population genome simulator with zeta-distributed allele frequency and indel lengths
freebayes - population-level Bayesian genetic variant detector
multichoose - C++, C, and Python libraries for generating multiset combinations (n multichoose k, aka 'choose with replacement') and multiset permutations